I’m currently a PhD student at the School of Computational Science and Engineering (CSE), Georgia Institue of Technology, advised by Prof. Yunan Luo. I received my bachelor’s degree in Computer Science from the Insitute for Interdesciplinary Information Sciences (Yao Class), Tsinghua University in 2023.

I have a wide range of research interests, including machine learning, deep learning and their application to computational biology.

[CV] [Google Scholar]

Publications

Learning maximally spanning representations improves protein function annotation [link]
Jiaqi Luo, Yunan Luo
RECOMB 2025

Pareto-optimal sampling for multi-objective protein sequence design [link]
Jiaqi Luo, Kerr Ding, Yunan Luo
iScience, 2025

Leveraging conformal prediction to annotate enzyme function space with limited false positives [link]
Kerr Ding, Jiaqi Luo, Yunan Luo
PLOS Computational Biology, 2024

Contrastive learning of protein representations with graph neural networks for structural and functional annotations [link]
Jiaqi Luo, Yunan Luo
PSB, 2022