Publications

Learning maximally spanning representations improves protein function annotation [link]
Jiaqi Luo, Yunan Luo
RECOMB 2025

Pareto-optimal sampling for multi-objective protein sequence design [link]
Jiaqi Luo, Kerr Ding, Yunan Luo
iScience, 2025

Leveraging conformal prediction to annotate enzyme function space with limited false positives [link]
Kerr Ding, Jiaqi Luo, Yunan Luo
PLOS Computational Biology, 2024

Contrastive learning of protein representations with graph neural networks for structural and functional annotations [link]
Jiaqi Luo, Yunan Luo
PSB, 2023